Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_101468 | Not Available | Positive | 618628 - 621357 | 101204.0 |
| membrane protein | SAMN05421747_101469 | Not Available | Negative | 621372 - 622319 | 35278.7 |
| long-chain acyl-coa synthetase | SAMN05421747_101470 | Not Available | Negative | 622340 - 624100 | 65064.4 |
| hypothetical protein | SAMN05421747_101471 | Not Available | Positive | 624284 - 624799 | 18974.7 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN05421747_101472 | Not Available | Negative | 624796 - 626559 | 65660.7 |
| membrane fusion protein, multidrug efflux system | SAMN05421747_101473 | Not Available | Positive | 626827 - 627891 | 38531.4 |
| hydrophobic/amphiphilic exporter-1, hae1 family/multidrug efflux pump | SAMN05421747_101474 | Not Available | Positive | 627903 - 631010 | 114355.0 |
| outer membrane protein tolc | SAMN05421747_101475 | Not Available | Positive | 631014 - 632315 | 48482.6 |
| badf-type atpase | SAMN05421747_101476 | Not Available | Positive | 632381 - 633247 | 32431.8 |
| glutathione peroxidase | SAMN05421747_101477 | Not Available | Positive | 633267 - 633782 | 18724.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
