Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_101428 | Not Available | Negative | 574193 - 574681 | 17666.9 |
| dna end-binding protein ku | SAMN05421747_101429 | Not Available | Positive | 574683 - 575576 | 33887.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN05421747_101430 | Not Available | Negative | 575596 - 576573 | 35334.8 |
| hypothetical protein | SAMN05421747_101431 | Not Available | Negative | 576570 - 577361 | 29122.8 |
| rna methyltransferase, trmh family | SAMN05421747_101432 | Not Available | Negative | 577428 - 578186 | 27615.7 |
| outer membrane protein assembly factor bama | SAMN05421747_101433 | Not Available | Positive | 578192 - 580540 | 89849.0 |
| hypothetical protein | SAMN05421747_101434 | Not Available | Negative | 580537 - 581076 | 20160.0 |
| gluconokinase | SAMN05421747_101435 | Not Available | Positive | 581193 - 582686 | 53623.0 |
| gnt-i system high-affinity gluconate transporter/gnt-ii system l-idonate transporter | SAMN05421747_101436 | Not Available | Positive | 582705 - 584021 | 45537.9 |
| hypothetical protein | SAMN05421747_101437 | Not Available | Positive | 584071 - 584319 | 9369.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
