Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_101408 | Not Available | Positive | 550104 - 550628 | 21340.7 |
| dihydroorotase | SAMN05421747_101409 | Not Available | Positive | 550781 - 552115 | 48852.2 |
| muramoyltetrapeptide carboxypeptidase | SAMN05421747_101410 | Not Available | Positive | 552134 - 553150 | 37156.9 |
| zinc carboxypeptidase | SAMN05421747_101411 | Not Available | Positive | 553153 - 554628 | 54984.4 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421747_101412 | Not Available | Negative | 554609 - 556117 | 55954.4 |
| methane oxygenase pmoa | SAMN05421747_101413 | Not Available | Positive | 556354 - 557325 | 36448.9 |
| type 1 glutamine amidotransferase (gatase1) | SAMN05421747_101414 | Not Available | Positive | 557322 - 558176 | 32427.5 |
| predicted dehydrogenase | SAMN05421747_101415 | Not Available | Positive | 558204 - 559619 | 51754.5 |
| putative oxidoreductase c terminal domain-containing protein | SAMN05421747_101416 | Not Available | Positive | 559658 - 561049 | 52216.6 |
| l-alanine-dl-glutamate epimerase | SAMN05421747_101417 | Not Available | Negative | 561137 - 562174 | 38207.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
