Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein sco1/2 | SAMN05421747_101388 | Not Available | Positive | 524580 - 525293 | 27305.7 |
| putative membrane protein | SAMN05421747_101389 | Not Available | Positive | 525313 - 525852 | 20351.7 |
| hypothetical protein | SAMN05421747_101390 | Not Available | Positive | 525891 - 526355 | 17610.2 |
| monofunctional biosynthetic peptidoglycan transglycosylase | SAMN05421747_101391 | Not Available | Negative | 526397 - 527131 | 29007.4 |
| dna mismatch repair protein muts | SAMN05421747_101392 | Not Available | Positive | 527223 - 529832 | 97252.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_101393 | Not Available | Positive | 530117 - 530692 | 22587.2 |
| fecr protein | SAMN05421747_101394 | Not Available | Positive | 530782 - 531948 | 43153.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_101395 | Not Available | Positive | 532139 - 535609 | 129784.0 |
| starch-binding associating with outer membrane | SAMN05421747_101396 | Not Available | Positive | 535611 - 537035 | 52930.7 |
| protein of unknown function | SAMN05421747_101397 | Not Available | Positive | 537048 - 538106 | 38821.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
