Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421747_101378 | Not Available | Positive | 515025 - 515561 | 19983.3 |
| cytochrome c oxidase, cbb3-type, subunit iii | SAMN05421747_101379 | Not Available | Positive | 515554 - 516183 | 22814.9 |
| hypothetical protein | SAMN05421747_101380 | Not Available | Positive | 516204 - 517439 | 46739.4 |
| cytochrome c oxidase subunit 2 | SAMN05421747_101381 | Not Available | Positive | 517515 - 518867 | 50625.6 |
| cytochrome c oxidase subunit 1 | SAMN05421747_101382 | Not Available | Positive | 518899 - 520788 | 70924.9 |
| cytochrome c oxidase assembly protein subunit 15 | SAMN05421747_101383 | Not Available | Positive | 520795 - 521853 | 39297.7 |
| protoheme ix farnesyltransferase | SAMN05421747_101384 | Not Available | Positive | 521881 - 522852 | 35615.5 |
| cytochrome c oxidase subunit 3 | SAMN05421747_101385 | Not Available | Positive | 522849 - 523439 | 21855.4 |
| cytochrome c oxidase subunit 3 | SAMN05421747_101386 | Not Available | Positive | 523449 - 524177 | 27696.9 |
| cytochrome c oxidase subunit iv | SAMN05421747_101387 | Not Available | Positive | 524202 - 524579 | 14515.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
