Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hexosaminidase | SAMN05421747_1319 | Not Available | Negative | 4462748 - 4464589 | 69213.4 |
| iron complex outermembrane recepter protein | SAMN05421747_13110 | Not Available | Positive | 4464750 - 4467200 | 90616.6 |
| uncharacterized iron-regulated membrane protein | SAMN05421747_13111 | Not Available | Positive | 4467210 - 4468553 | 50333.9 |
| hypothetical protein | SAMN05421747_13112 | Not Available | Positive | 4468553 - 4468807 | 9511.7 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN05421747_13113 | Not Available | Negative | 4468795 - 4469448 | 23624.7 |
| 2-dehydro-3-deoxygluconokinase | SAMN05421747_13114 | Not Available | Negative | 4469459 - 4470451 | 35976.8 |
| methionine-gamma-lyase | SAMN05421747_13115 | Not Available | Negative | 4470479 - 4471663 | 42847.1 |
| hypothetical protein | SAMN05421747_13116 | Not Available | Negative | 4471697 - 4471882 | 6704.58 |
| transcription-repair coupling factor (superfamily ii helicase) | SAMN05421747_13117 | Not Available | Negative | 4472078 - 4475410 | 125897.0 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421747_13118 | Not Available | Positive | 4475460 - 4476530 | 39428.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
