Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_13024 | Not Available | Positive | 4456056 - 4456667 | 23834.8 |
| hypothetical protein | SAMN05421747_13025 | Not Available | Positive | 4456849 - 4456992 | 5945.23 |
| hypothetical protein | SAMN05421747_1311 | Not Available | Negative | 4456993 - 4457089 | 3725.75 |
| hypothetical protein | SAMN05421747_1312 | Not Available | Negative | 4457112 - 4458041 | 32929.3 |
| 6-phosphogluconolactonase | SAMN05421747_1313 | Not Available | Negative | 4458100 - 4458819 | 27065.0 |
| glucose-6-phosphate 1-dehydrogenase | SAMN05421747_1314 | Not Available | Negative | 4458832 - 4460334 | 57653.4 |
| ribose 5-phosphate isomerase b | SAMN05421747_1315 | Not Available | Negative | 4460398 - 4460859 | 16616.9 |
| dna-binding transcriptional regulator, padr family | SAMN05421747_1316 | Not Available | Positive | 4461035 - 4461382 | 12893.7 |
| hypothetical protein | SAMN05421747_1317 | Not Available | Positive | 4461370 - 4462095 | 26992.2 |
| hypothetical protein | SAMN05421747_1318 | Not Available | Positive | 4462106 - 4462777 | 25665.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
