Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_1304 | Not Available | Negative | 4436022 - 4436477 | 17502.0 |
| hypothetical protein | SAMN05421747_1305 | Not Available | Negative | 4436588 - 4437088 | 18777.8 |
| signal transduction histidine kinase | SAMN05421747_1306 | Not Available | Negative | 4437236 - 4438621 | 52441.4 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05421747_1307 | Not Available | Negative | 4438633 - 4439328 | 26079.9 |
| sugar or nucleoside kinase, ribokinase family | SAMN05421747_1308 | Not Available | Positive | 4439630 - 4440550 | 33489.4 |
| predicted heme/steroid binding protein | SAMN05421747_1309 | Not Available | Negative | 4440568 - 4440813 | 9468.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_13010 | Not Available | Negative | 4440821 - 4441330 | 19632.5 |
| udp-n-acetylmuramate dehydrogenase | SAMN05421747_13011 | Not Available | Negative | 4441541 - 4442569 | 37890.2 |
| tetr/acrr family transcriptional regulator, mexjk operon transcriptional repressor | SAMN05421747_13012 | Not Available | Positive | 4442718 - 4443332 | 23116.4 |
| thioredoxin reductase (nadph) | SAMN05421747_13013 | Not Available | Negative | 4443295 - 4444320 | 38016.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
