Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_1292 | Not Available | Negative | 4411891 - 4412190 | 12436.0 |
| iron-binding zinc finger cdgsh type | SAMN05421747_1293 | Not Available | Positive | 4412314 - 4412538 | 8117.7 |
| hypothetical protein | SAMN05421747_1294 | Not Available | Negative | 4412429 - 4412830 | 15821.3 |
| hypothetical protein | SAMN05421747_1295 | Not Available | Positive | 4412905 - 4413072 | 6379.28 |
| 8-oxo-dgtp diphosphatase | SAMN05421747_1296 | Not Available | Positive | 4413105 - 4413203 | 3783.61 |
| hypothetical protein | SAMN05421747_1297 | Not Available | Negative | 4413708 - 4414157 | 17096.3 |
| hnh endonuclease | SAMN05421747_1298 | Not Available | Negative | 4414309 - 4414905 | 22178.6 |
| dna (cytosine-5)-methyltransferase 1 | SAMN05421747_1299 | Not Available | Negative | 4414859 - 4415860 | 36158.6 |
| dna mismatch endonuclease, patch repair protein | SAMN05421747_12910 | Not Available | Negative | 4415903 - 4416352 | 17865.7 |
| hypothetical protein | SAMN05421747_12911 | Not Available | Positive | 4416382 - 4416546 | 6251.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
