Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system (t2ss), protein m | SAMN05421747_12716 | Not Available | Positive | 4375887 - 4376420 | 19808.0 |
| hypothetical protein | SAMN05421747_12717 | Not Available | Positive | 4376428 - 4377408 | 36615.6 |
| hypothetical protein | SAMN05421747_12718 | Not Available | Positive | 4377426 - 4377917 | 17594.2 |
| antitoxin component ywqk of the ywqjk toxin-antitoxin module | SAMN05421747_12719 | Not Available | Positive | 4377931 - 4378569 | 24966.5 |
| helix-turn-helix | SAMN05421747_12720 | Not Available | Positive | 4378591 - 4379004 | 15988.3 |
| hypothetical protein | SAMN05421747_12721 | Not Available | Positive | 4379096 - 4382914 | 143439.0 |
| nhl repeat-containing protein | SAMN05421747_12722 | Not Available | Positive | 4382924 - 4385817 | 102327.0 |
| hypothetical protein | SAMN05421747_1281 | Not Available | Negative | 4385818 - 4385996 | 6404.76 |
| hypothetical protein | SAMN05421747_1282 | Not Available | Negative | 4386468 - 4386587 | 4585.63 |
| hypothetical protein | SAMN05421747_1283 | Not Available | Positive | 4386639 - 4389149 | 96046.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
