Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fasciclin domain-containing protein | SAMN05421747_1266 | Not Available | Positive | 4342009 - 4343394 | 51275.3 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN05421747_1267 | Not Available | Positive | 4343423 - 4344406 | 35665.1 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN05421747_1268 | Not Available | Positive | 4344447 - 4347692 | 120261.0 |
| hypothetical protein | SAMN05421747_1269 | Not Available | Positive | 4347806 - 4348087 | 10248.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_12610 | Not Available | Positive | 4348853 - 4349410 | 21767.4 |
| hypothetical protein | SAMN05421747_12611 | Not Available | Positive | 4349531 - 4349785 | 9563.48 |
| ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19 | SAMN05421747_12612 | Not Available | Positive | 4349760 - 4350638 | 32798.5 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421747_12613 | Not Available | Positive | 4350635 - 4353247 | 97615.7 |
| protein of unknown function | SAMN05421747_12614 | Not Available | Positive | 4353259 - 4354077 | 30203.4 |
| hypothetical protein | SAMN05421747_12615 | Not Available | Negative | 4354156 - 4354563 | 15035.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
