Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chitinase | SAMN05421747_101358 | Not Available | Negative | 484770 - 485867 | 41548.1 |
| alpha-l-fucosidase | SAMN05421747_101359 | Not Available | Negative | 485864 - 487201 | 49782.7 |
| esterase phb depolymerase | SAMN05421747_101360 | Not Available | Negative | 487198 - 489744 | 93344.7 |
| alpha-l-fucosidase | SAMN05421747_101361 | Not Available | Negative | 489744 - 491192 | 55698.5 |
| hypothetical protein | SAMN05421747_101362 | Not Available | Negative | 491284 - 491685 | 15223.2 |
| copper type ii ascorbate-dependent monooxygenase, c-terminal domain | SAMN05421747_101363 | Not Available | Negative | 491682 - 493043 | 51623.9 |
| thioredoxin-like domain-containing protein | SAMN05421747_101364 | Not Available | Negative | 493057 - 493623 | 20945.2 |
| starch-binding associating with outer membrane | SAMN05421747_101365 | Not Available | Negative | 493676 - 495250 | 58969.1 |
| iron complex outermembrane recepter protein | SAMN05421747_101366 | Not Available | Negative | 495331 - 498705 | 123199.0 |
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN05421747_101367 | Not Available | Negative | 498734 - 499969 | 44340.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
