Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN05421747_12350 | Not Available | Positive | 4257005 - 4257715 | 27775.2 |
| gaf domain-containing protein | SAMN05421747_12351 | Not Available | Positive | 4257808 - 4258773 | 35996.0 |
| nad(p)h-dependent fmn reductase | SAMN05421747_12352 | Not Available | Positive | 4258892 - 4259485 | 21719.0 |
| predicted arabinose efflux permease, mfs family | SAMN05421747_12353 | Not Available | Positive | 4259490 - 4260752 | 45381.9 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05421747_12354 | Not Available | Negative | 4260763 - 4261491 | 26386.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421747_12355 | Not Available | Negative | 4261511 - 4262494 | 36896.3 |
| adp-heptose:lps heptosyltransferase | SAMN05421747_12356 | Not Available | Negative | 4262478 - 4263632 | 42271.8 |
| hypothetical protein | SAMN05421747_12357 | Not Available | Negative | 4263656 - 4264144 | 18059.4 |
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN05421747_12358 | Not Available | Negative | 4264231 - 4265277 | 39285.6 |
| hypothetical protein | SAMN05421747_12359 | Not Available | Positive | 4265570 - 4265983 | 15675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
