Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted amidohydrolase | SAMN05421747_101348 | Not Available | Positive | 466292 - 467803 | 57464.8 |
| cell surface protein spra | SAMN05421747_101349 | Not Available | Negative | 467820 - 474932 | 271191.0 |
| holliday junction dna helicase ruva | SAMN05421747_101350 | Not Available | Negative | 474929 - 475510 | 21139.7 |
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | SAMN05421747_101351 | Not Available | Negative | 475521 - 477812 | 83771.7 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN05421747_101352 | Not Available | Negative | 477886 - 479298 | 50922.1 |
| gh3 auxin-responsive promoter | SAMN05421747_101353 | Not Available | Positive | 479402 - 480922 | 57353.8 |
| hypothetical protein | SAMN05421747_101354 | Not Available | Negative | 480925 - 481650 | 27629.6 |
| xaa-pro aminopeptidase | SAMN05421747_101355 | Not Available | Positive | 481758 - 483536 | 65090.2 |
| hypothetical protein | SAMN05421747_101356 | Not Available | Positive | 483762 - 483893 | 5057.46 |
| hypothetical protein | SAMN05421747_101357 | Not Available | Positive | 484082 - 484303 | 8269.72 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
