Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phnb protein | SAMN05421747_12246 | Not Available | Negative | 4187800 - 4188201 | 14801.7 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN05421747_12247 | Not Available | Negative | 4188214 - 4188663 | 16594.8 |
| uncharacterized conserved protein ydhg, yjbr/cyay-like superfamily, duf1801 family | SAMN05421747_12248 | Not Available | Negative | 4188690 - 4189070 | 14749.6 |
| doxx-like family protein | SAMN05421747_12249 | Not Available | Negative | 4189063 - 4189437 | 13839.4 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN05421747_12250 | Not Available | Negative | 4189459 - 4189884 | 15929.4 |
| transcriptional regulator glxa family, contains an amidase domain and an arac-type dna-binding hth domain | SAMN05421747_12251 | Not Available | Positive | 4190027 - 4191016 | 37458.9 |
| hypothetical protein | SAMN05421747_12252 | Not Available | Positive | 4191359 - 4191475 | 4371.35 |
| rna polymerase primary sigma factor | SAMN05421747_12253 | Not Available | Negative | 4191472 - 4192332 | 31866.4 |
| cold shock protein (beta-ribbon, cspa family) | SAMN05421747_12254 | Not Available | Negative | 4192555 - 4192746 | 7015.29 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN05421747_12255 | Not Available | Negative | 4192965 - 4194053 | 40023.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
