Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_12216 | Not Available | Positive | 4151500 - 4151640 | 5279.62 |
| hypothetical protein | SAMN05421747_12217 | Not Available | Negative | 4151922 - 4152050 | 4985.02 |
| hypothetical protein | SAMN05421747_12218 | Not Available | Positive | 4153059 - 4153160 | 3945.0 |
| hypothetical protein | SAMN05421747_12219 | Not Available | Positive | 4153358 - 4153627 | 10022.5 |
| hypothetical protein | SAMN05421747_12220 | Not Available | Positive | 4153615 - 4153944 | 12497.5 |
| crispr-associated protein cas2 | SAMN05421747_12221 | Not Available | Negative | 4156437 - 4156700 | 10279.8 |
| crisp-associated protein cas1 | SAMN05421747_12222 | Not Available | Negative | 4156700 - 4157707 | 38818.1 |
| crispr-associated exonuclease cas4 | SAMN05421747_12223 | Not Available | Negative | 4157714 - 4158226 | 19957.6 |
| hypothetical protein | SAMN05421747_12224 | Not Available | Negative | 4158223 - 4159377 | 43796.1 |
| crispr-associated endonuclease/helicase cas3 | SAMN05421747_12225 | Not Available | Negative | 4159431 - 4162229 | 109024.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
