Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_12133 | Not Available | Positive | 4107420 - 4108508 | 39674.3 |
| dna-binding transcriptional regulator, laci/purr family | SAMN05421747_12134 | Not Available | Negative | 4108528 - 4109538 | 37296.1 |
| family of unknown function | SAMN05421747_12135 | Not Available | Positive | 4109778 - 4115072 | 196702.0 |
| outer membrane protein assembly factor bama | SAMN05421747_12136 | Not Available | Positive | 4115020 - 4117368 | 90322.3 |
| malate dehydrogenase | SAMN05421747_12137 | Not Available | Positive | 4117426 - 4118364 | 33062.0 |
| aspartyl protease | SAMN05421747_12138 | Not Available | Positive | 4118368 - 4118817 | 16366.0 |
| inosine-uridine preferring nucleoside hydrolase | SAMN05421747_12139 | Not Available | Negative | 4119136 - 4120152 | 36778.1 |
| starch-binding associating with outer membrane | SAMN05421747_12140 | Not Available | Negative | 4120217 - 4122211 | 75041.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_12141 | Not Available | Negative | 4122223 - 4125486 | 120140.0 |
| glucose uptake protein | SAMN05421747_12142 | Not Available | Negative | 4125530 - 4126534 | 35302.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
