Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan synthase, alpha chain | SAMN05421747_12113 | Not Available | Positive | 4085436 - 4086209 | 28592.2 |
| putative beta-lactamase-inhibitor-like, pepsy-like | SAMN05421747_12114 | Not Available | Negative | 4086222 - 4086755 | 20366.4 |
| hypothetical protein | SAMN05421747_12115 | Not Available | Positive | 4086785 - 4087237 | 16315.5 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421747_12116 | Not Available | Positive | 4087354 - 4090284 | 107971.0 |
| hypothetical protein | SAMN05421747_12117 | Not Available | Positive | 4090397 - 4091266 | 32774.0 |
| septum formation protein | SAMN05421747_12118 | Not Available | Negative | 4091319 - 4091933 | 22668.1 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase) | SAMN05421747_12119 | Not Available | Negative | 4091944 - 4092477 | 18514.0 |
| uncharacterized protein yqfa, upf0365 family | SAMN05421747_12120 | Not Available | Negative | 4092664 - 4093653 | 35077.5 |
| hypothetical protein | SAMN05421747_12121 | Not Available | Positive | 4093744 - 4094772 | 39544.3 |
| hypothetical protein | SAMN05421747_12122 | Not Available | Positive | 4094942 - 4096108 | 45351.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
