Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cubico group peptidase, beta-lactamase class c family | SAMN05421747_12061 | Not Available | Positive | 4047511 - 4048965 | 53598.7 |
| putative abc transport system permease protein | SAMN05421747_12062 | Not Available | Negative | 4048985 - 4051540 | 93352.5 |
| putative abc transport system atp-binding protein | SAMN05421747_12063 | Not Available | Negative | 4051537 - 4052208 | 24023.8 |
| prolyl oligopeptidase family protein | SAMN05421747_12064 | Not Available | Positive | 4052391 - 4055180 | 105347.0 |
| glutamine synthetase | SAMN05421747_12065 | Not Available | Positive | 4055370 - 4057556 | 81858.0 |
| protein of unknown function | SAMN05421747_12066 | Not Available | Negative | 4057592 - 4058086 | 18670.2 |
| hypothetical protein | SAMN05421747_12068 | Not Available | Negative | 4058316 - 4058510 | 7643.24 |
| o-acetylhomoserine (thiol)-lyase | SAMN05421747_12069 | Not Available | Positive | 4058531 - 4059838 | 47201.8 |
| homoserine o-acetyltransferase | SAMN05421747_12070 | Not Available | Positive | 4059869 - 4060927 | 39602.2 |
| homoserine dehydrogenase | SAMN05421747_12071 | Not Available | Positive | 4060954 - 4062138 | 43878.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
