Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit d | SAMN05421747_12021 | Not Available | Negative | 4011285 - 4012496 | 45610.6 |
| nadh-quinone oxidoreductase subunit c | SAMN05421747_12022 | Not Available | Negative | 4012515 - 4013015 | 18977.6 |
| pyridoxamine 5'-phosphate oxidase | SAMN05421747_12023 | Not Available | Negative | 4013020 - 4013679 | 25343.8 |
| peptidase family m48 | SAMN05421747_12024 | Not Available | Negative | 4013718 - 4014527 | 29306.1 |
| glycerol-3-phosphate acyltransferase plsy | SAMN05421747_12025 | Not Available | Negative | 4014597 - 4015253 | 23463.3 |
| nicotinate-nucleotide pyrophosphorylase (carboxylating) | SAMN05421747_12026 | Not Available | Negative | 4015299 - 4016189 | 32062.8 |
| protein of unknown function | SAMN05421747_12027 | Not Available | Negative | 4016280 - 4016696 | 15779.0 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | SAMN05421747_12028 | Not Available | Positive | 4016912 - 4018438 | 55367.8 |
| hypothetical protein | SAMN05421747_12029 | Not Available | Positive | 4018446 - 4019015 | 21357.4 |
| tetratricopeptide repeat-containing protein | SAMN05421747_12030 | Not Available | Negative | 4019065 - 4019718 | 23955.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
