Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| calcineurin-like phosphoesterase | SAMN05421747_11920 | Not Available | Positive | 3946167 - 3947720 | 57955.9 |
| hemoglobin | SAMN05421747_11921 | Not Available | Negative | 3947874 - 3948269 | 15863.3 |
| protein of unknown function | SAMN05421747_11922 | Not Available | Negative | 3948345 - 3948911 | 21793.5 |
| doxx-like family protein | SAMN05421747_11923 | Not Available | Negative | 3948946 - 3949350 | 14803.5 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN05421747_11924 | Not Available | Negative | 3949355 - 3949822 | 18061.9 |
| transcriptional regulator, arsr family | SAMN05421747_11925 | Not Available | Negative | 3949831 - 3950145 | 12167.7 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN05421747_11926 | Not Available | Negative | 3950219 - 3950830 | 22082.4 |
| soluble nsf attachment protein, snap | SAMN05421747_11927 | Not Available | Negative | 3950808 - 3952775 | 74209.4 |
| hypothetical protein | SAMN05421747_11928 | Not Available | Positive | 3952937 - 3954091 | 41674.5 |
| hypothetical protein | SAMN05421747_11929 | Not Available | Positive | 3954113 - 3954646 | 18730.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
