Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19 | SAMN05421747_11910 | Not Available | Positive | 3931392 - 3932360 | 36151.5 |
| tonb-dependent receptor | SAMN05421747_11911 | Not Available | Positive | 3932555 - 3935566 | 113002.0 |
| calcineurin-like phosphoesterase | SAMN05421747_11912 | Not Available | Positive | 3935642 - 3936862 | 46542.7 |
| hypothetical protein | SAMN05421747_11913 | Not Available | Positive | 3936993 - 3937361 | 14390.5 |
| hypothetical protein | SAMN05421747_11914 | Not Available | Positive | 3937358 - 3937576 | 8293.21 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_11915 | Not Available | Positive | 3937648 - 3938223 | 21913.8 |
| ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19 | SAMN05421747_11916 | Not Available | Positive | 3938315 - 3939298 | 37004.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_11917 | Not Available | Positive | 3939470 - 3943087 | 134209.0 |
| starch-binding associating with outer membrane | SAMN05421747_11918 | Not Available | Positive | 3943098 - 3944654 | 59576.1 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN05421747_11919 | Not Available | Positive | 3944861 - 3946027 | 43330.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
