Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN05421747_11861 | Not Available | Negative | 3905374 - 3905982 | 23704.7 |
| outer membrane protein | SAMN05421747_11862 | Not Available | Positive | 3906040 - 3907431 | 51541.1 |
| hlyd family secretion protein | SAMN05421747_11863 | Not Available | Positive | 3907452 - 3908801 | 48198.4 |
| helix-turn-helix domain-containing protein | SAMN05421747_11864 | Not Available | Negative | 3908798 - 3909070 | 10242.5 |
| hypothetical protein | SAMN05421747_11865 | Not Available | Positive | 3909364 - 3909603 | 8050.89 |
| hlyd family secretion protein | SAMN05421747_11866 | Not Available | Positive | 3909721 - 3910905 | 44644.3 |
| atp-binding cassette, subfamily b | SAMN05421747_11867 | Not Available | Positive | 3910931 - 3913138 | 82206.1 |
| hypothetical protein | SAMN05421747_11868 | Not Available | Positive | 3913214 - 3913576 | 13618.5 |
| ferritin | SAMN05421747_11869 | Not Available | Positive | 3913752 - 3914276 | 20532.4 |
| carboxypepd_reg-like domain-containing protein | SAMN05421747_11870 | Not Available | Positive | 3914434 - 3917199 | 104903.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
