Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN05421747_11675 | Not Available | Negative | 3670366 - 3670953 | 22598.7 |
| orotate phosphoribosyltransferase | SAMN05421747_11676 | Not Available | Positive | 3670976 - 3671641 | 24386.3 |
| polyketide cyclase / dehydrase and lipid transport | SAMN05421747_11677 | Not Available | Positive | 3671658 - 3672056 | 15120.3 |
| superoxide dismutase, fe-mn family | SAMN05421747_11678 | Not Available | Negative | 3672139 - 3672900 | 27992.3 |
| protein disulfide-isomerase | SAMN05421747_11679 | Not Available | Negative | 3673004 - 3673741 | 27259.4 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421747_11680 | Not Available | Negative | 3673787 - 3674797 | 38350.3 |
| predicted arabinose efflux permease, mfs family | SAMN05421747_11681 | Not Available | Negative | 3674812 - 3675978 | 41845.3 |
| thiosulfate dehydrogenase | SAMN05421747_11682 | Not Available | Negative | 3675975 - 3676370 | 14265.0 |
| ornithine--oxo-acid transaminase | SAMN05421747_11683 | Not Available | Positive | 3676466 - 3677704 | 45327.4 |
| 23s rrna (guanosine2251-2'-o)-methyltransferase | SAMN05421747_11684 | Not Available | Positive | 3677721 - 3678494 | 28208.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
