Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN05421747_11635 | Not Available | Positive | 3623079 - 3624041 | 36439.5 |
| predicted dehydrogenase | SAMN05421747_11636 | Not Available | Positive | 3624101 - 3625420 | 48851.8 |
| thiamine biosynthesis lipoprotein | SAMN05421747_11637 | Not Available | Positive | 3625389 - 3626438 | 38984.8 |
| hydroxypyruvate isomerase | SAMN05421747_11638 | Not Available | Positive | 3626489 - 3627409 | 33864.4 |
| nucleoside transporter | SAMN05421747_11639 | Not Available | Positive | 3627498 - 3628754 | 46582.7 |
| choline dehydrogenase | SAMN05421747_11640 | Not Available | Positive | 3628879 - 3630558 | 63059.5 |
| gluconate 2-dehydrogenase subunit 3 | SAMN05421747_11641 | Not Available | Positive | 3630623 - 3631174 | 20196.0 |
| prephenate dehydrogenase | SAMN05421747_11642 | Not Available | Negative | 3631324 - 3632163 | 31058.7 |
| aspartate/methionine/tyrosine aminotransferase | SAMN05421747_11643 | Not Available | Negative | 3632193 - 3633365 | 43424.0 |
| atp-binding cassette, subfamily b, msba | SAMN05421747_11644 | Not Available | Positive | 3633472 - 3635289 | 67057.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
