Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system permease protein | SAMN05421747_1165 | Not Available | Positive | 3592152 - 3593030 | 30995.2 |
| putative abc transport system atp-binding protein | SAMN05421747_1166 | Not Available | Positive | 3593038 - 3593793 | 27636.7 |
| protein of unknown function | SAMN05421747_1167 | Not Available | Positive | 3593839 - 3595125 | 49499.8 |
| hypothetical protein | SAMN05421747_1168 | Not Available | Positive | 3595126 - 3595350 | 8921.32 |
| ankyrin repeat | SAMN05421747_1169 | Not Available | Negative | 3595347 - 3595997 | 23287.0 |
| npcbm-associated, new3 domain of alpha-galactosidase | SAMN05421747_11610 | Not Available | Positive | 3596273 - 3597502 | 44526.6 |
| abc-2 type transport system atp-binding protein | SAMN05421747_11611 | Not Available | Positive | 3597506 - 3598474 | 34879.2 |
| abc-2 type transport system permease protein | SAMN05421747_11612 | Not Available | Positive | 3598419 - 3599522 | 41412.7 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | SAMN05421747_11613 | Not Available | Positive | 3599603 - 3600172 | 20669.0 |
| hypothetical protein | SAMN05421747_11614 | Not Available | Positive | 3600243 - 3600401 | 5773.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
