Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyisoprenoid-binding protein ycei | SAMN05421747_11598 | Not Available | Positive | 3553125 - 3553805 | 23633.8 |
| hlyd family secretion protein | SAMN05421747_11599 | Not Available | Negative | 3553856 - 3555109 | 47140.1 |
| hypothetical protein | SAMN05421747_115100 | Not Available | Positive | 3555745 - 3556572 | 30246.6 |
| putative redox protein | SAMN05421747_115101 | Not Available | Negative | 3556744 - 3556878 | 4846.78 |
| hypothetical protein | SAMN05421747_115102 | Not Available | Negative | 3556823 - 3557035 | 8305.93 |
| outer membrane protein beta-barrel domain-containing protein | SAMN05421747_115103 | Not Available | Positive | 3557400 - 3559202 | 66171.9 |
| chat domain-containing protein | SAMN05421747_115104 | Not Available | Negative | 3559280 - 3561892 | 98922.7 |
| pkd domain-containing protein | SAMN05421747_115105 | Not Available | Negative | 3561892 - 3563883 | 73773.5 |
| rna polymerase sigma factor, sigma-70 family | SAMN05421747_115106 | Not Available | Positive | 3563973 - 3564536 | 21595.1 |
| tetratricopeptide repeat-containing protein | SAMN05421747_115107 | Not Available | Positive | 3564539 - 3565258 | 26749.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
