Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN05421747_11588 | Not Available | Positive | 3542186 - 3543205 | 36598.2 |
| cytochrome c | SAMN05421747_11589 | Not Available | Positive | 3543207 - 3545876 | 98448.4 |
| nucleoside transporter | SAMN05421747_11590 | Not Available | Positive | 3545889 - 3547142 | 45721.4 |
| predicted dehydrogenase | SAMN05421747_11591 | Not Available | Positive | 3547132 - 3548214 | 39865.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_11592 | Not Available | Positive | 3548307 - 3548906 | 22969.7 |
| ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19 | SAMN05421747_11593 | Not Available | Positive | 3548988 - 3549998 | 37730.7 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN05421747_11594 | Not Available | Positive | 3550217 - 3551497 | 46169.9 |
| hypothetical protein | SAMN05421747_11595 | Not Available | Positive | 3551570 - 3552127 | 20481.8 |
| right handed beta helix region | SAMN05421747_11596 | Not Available | Positive | 3552097 - 3552459 | 13185.6 |
| hypothetical protein | SAMN05421747_11597 | Not Available | Positive | 3552514 - 3552891 | 14103.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
