Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05421747_101288 | Not Available | Negative | 389058 - 389936 | 32128.1 |
| tetratricopeptide repeat-containing protein | SAMN05421747_101289 | Not Available | Positive | 390003 - 392846 | 108023.0 |
| penicillin-binding protein 1a | SAMN05421747_101290 | Not Available | Positive | 392922 - 395165 | 84752.3 |
| excinuclease abc subunit c | SAMN05421747_101291 | Not Available | Positive | 395190 - 396989 | 69358.0 |
| hypothetical protein | SAMN05421747_101292 | Not Available | Positive | 397114 - 397305 | 6917.56 |
| protein of unknown function | SAMN05421747_101293 | Not Available | Negative | 397395 - 397634 | 8838.86 |
| yjef c-terminal region, hydroxyethylthiazole kinase-related/yjef n-terminal region | SAMN05421747_101294 | Not Available | Negative | 397749 - 399239 | 53957.3 |
| fes assembly suf system protein | SAMN05421747_101295 | Not Available | Positive | 399334 - 399654 | 11650.3 |
| hypothetical protein | SAMN05421747_101296 | Not Available | Negative | 399666 - 400277 | 22636.9 |
| monovalent cation:h+ antiporter-2, cpa2 family | SAMN05421747_101297 | Not Available | Negative | 400282 - 401526 | 45076.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
