Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase hii | SAMN05421747_1158 | Not Available | Negative | 3452593 - 3453189 | 22318.7 |
| hypothetical protein | SAMN05421747_1159 | Not Available | Positive | 3453316 - 3454134 | 30154.4 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN05421747_11510 | Not Available | Positive | 3454154 - 3457033 | 106934.0 |
| predicted zn-dependent peptidase | SAMN05421747_11511 | Not Available | Positive | 3457064 - 3458293 | 46001.4 |
| hypothetical protein | SAMN05421747_11512 | Not Available | Positive | 3458339 - 3458728 | 14837.6 |
| protein of unknown function, duf481 | SAMN05421747_11513 | Not Available | Negative | 3458770 - 3459504 | 28279.3 |
| [acyl-carrier-protein] s-malonyltransferase | SAMN05421747_11514 | Not Available | Positive | 3459634 - 3460518 | 31523.1 |
| s-adenosylmethionine synthetase | SAMN05421747_11515 | Not Available | Negative | 3460547 - 3461800 | 46039.6 |
| lipid kinase, yegs/rv2252/bmru family | SAMN05421747_11516 | Not Available | Positive | 3461840 - 3462865 | 37097.6 |
| translation initiation factor 1 | SAMN05421747_11517 | Not Available | Positive | 3462871 - 3463218 | 12766.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
