Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese/zinc/iron transport system atp-binding protein | SAMN05421747_11490 | Not Available | Positive | 3431822 - 3432610 | 29102.4 |
| manganese/zinc/iron transport system permease protein | SAMN05421747_11491 | Not Available | Positive | 3432620 - 3433924 | 47414.4 |
| manganese/zinc/iron transport system permease protein | SAMN05421747_11492 | Not Available | Positive | 3433921 - 3434799 | 31072.9 |
| phnb protein | SAMN05421747_11493 | Not Available | Negative | 3434833 - 3435255 | 15728.4 |
| alpha-l-fucosidase 2 | SAMN05421747_11494 | Not Available | Positive | 3435461 - 3437737 | 86125.0 |
| Trna-leu | Not Available | Not Available | Positive | 3437864 - 3437948 | Not Available |
| antitoxin component higa of the higab toxin-antitoxin module, contains an n-terminal hth domain | SAMN05421747_11496 | Not Available | Negative | 3438020 - 3438406 | 14181.3 |
| mrna interferase higb | SAMN05421747_11497 | Not Available | Negative | 3438421 - 3438717 | 11371.7 |
| fructosamine-3-kinase | SAMN05421747_11498 | Not Available | Positive | 3439211 - 3440104 | 33255.7 |
| hypothetical protein | SAMN05421747_11499 | Not Available | Positive | 3440319 - 3441419 | 40220.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
