Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar (glycoside-pentoside-hexuronide) transporter | SAMN05421747_11460 | Not Available | Negative | 3377589 - 3379058 | 54042.6 |
| endo-1,4-beta-xylanase | SAMN05421747_11461 | Not Available | Negative | 3379063 - 3380193 | 42574.4 |
| signal transduction histidine kinase | SAMN05421747_11462 | Not Available | Negative | 3380382 - 3384446 | 151877.0 |
| alpha-l-fucosidase 2 | SAMN05421747_11463 | Not Available | Negative | 3384520 - 3386970 | 90497.7 |
| carbohydrate binding domain-containing protein | SAMN05421747_11464 | Not Available | Negative | 3386987 - 3389128 | 77809.4 |
| protein of unknown function | SAMN05421747_11465 | Not Available | Negative | 3389153 - 3390181 | 37793.8 |
| starch-binding associating with outer membrane | SAMN05421747_11466 | Not Available | Negative | 3390231 - 3391994 | 65211.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_11467 | Not Available | Negative | 3392018 - 3394840 | 104506.0 |
| starch-binding associating with outer membrane | SAMN05421747_11468 | Not Available | Negative | 3394867 - 3396777 | 72885.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_11469 | Not Available | Negative | 3396789 - 3399959 | 118554.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
