Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease, protease subunit | SAMN05421747_11420 | Not Available | Positive | 3328068 - 3328763 | 25717.2 |
| atp-dependent clp protease atp-binding subunit clpx | SAMN05421747_11421 | Not Available | Positive | 3328767 - 3330014 | 46711.9 |
| amp nucleosidase | SAMN05421747_11422 | Not Available | Positive | 3330089 - 3330910 | 30219.8 |
| cystathionine beta-synthase | SAMN05421747_11423 | Not Available | Positive | 3330925 - 3332286 | 49861.6 |
| polyisoprenoid-binding protein ycei | SAMN05421747_11424 | Not Available | Negative | 3332352 - 3332984 | 22285.9 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | SAMN05421747_11425 | Not Available | Negative | 3333044 - 3334375 | 48276.9 |
| protein of unknown function | SAMN05421747_11426 | Not Available | Negative | 3334372 - 3335022 | 25098.2 |
| dna helicase-2 / atp-dependent dna helicase pcra | SAMN05421747_11427 | Not Available | Negative | 3335032 - 3337299 | 85910.4 |
| replicative dna helicase | SAMN05421747_11428 | Not Available | Negative | 3337361 - 3338944 | 58524.6 |
| demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase | SAMN05421747_11429 | Not Available | Positive | 3339310 - 3340047 | 27483.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
