Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx protein | SAMN05421747_11312 | Not Available | Positive | 3164177 - 3165346 | 43962.6 |
| shikimate kinase | SAMN05421747_11313 | Not Available | Positive | 3165358 - 3165885 | 19565.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN05421747_11314 | Not Available | Positive | 3165948 - 3166892 | 34822.6 |
| abc-2 type transport system atp-binding protein | SAMN05421747_11315 | Not Available | Positive | 3166899 - 3167612 | 26040.7 |
| hypothetical protein | SAMN05421747_11316 | Not Available | Positive | 3167744 - 3168319 | 19731.3 |
| abc-2 type transport system permease protein | SAMN05421747_11317 | Not Available | Positive | 3168426 - 3170843 | 88684.9 |
| acetyl-coa hydrolase/succinyl-coa:acetate coa-transferase | SAMN05421747_11318 | Not Available | Negative | 3170872 - 3172362 | 53904.5 |
| arac-type dna-binding protein | SAMN05421747_11319 | Not Available | Positive | 3172520 - 3173332 | 31532.1 |
| protein of unknown function | SAMN05421747_11320 | Not Available | Positive | 3173361 - 3174215 | 31370.7 |
| small subunit ribosomal protein s20 | SAMN05421747_11321 | Not Available | Negative | 3174766 - 3175020 | 9614.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
