Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, acrr family | SAMN05421747_11285 | Not Available | Negative | 3100387 - 3100971 | 21882.6 |
| superfamily ii dna and rna helicase | SAMN05421747_11286 | Not Available | Positive | 3101134 - 3102390 | 46548.4 |
| two-component system, ompr family, phosphate regulon response regulator phob/two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN05421747_11287 | Not Available | Positive | 3102483 - 3102842 | 13643.6 |
| malate dehydrogenase (quinone) | SAMN05421747_11288 | Not Available | Positive | 3102983 - 3104500 | 55646.0 |
| nicotinamide mononucleotide transporter | SAMN05421747_11289 | Not Available | Positive | 3104504 - 3105145 | 24057.8 |
| acyl-coa dehydrogenase | SAMN05421747_11290 | Not Available | Positive | 3105142 - 3106200 | 39013.6 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMN05421747_11291 | Not Available | Positive | 3106275 - 3107078 | 29225.1 |
| bacteriocin-protection, ydei or ompd-associated | SAMN05421747_11292 | Not Available | Positive | 3107100 - 3107606 | 19066.2 |
| peroxiredoxin q/bcp | SAMN05421747_11293 | Not Available | Positive | 3107632 - 3108081 | 16463.0 |
| integrase/recombinase xerd | SAMN05421747_11294 | Not Available | Negative | 3108118 - 3109011 | 33384.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
