Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine or glycine:cation symporter, agcs family | SAMN05421747_11275 | Not Available | Positive | 3088063 - 3089514 | 52143.8 |
| gmp synthase (glutamine-hydrolysing) | SAMN05421747_11276 | Not Available | Positive | 3089567 - 3091117 | 56802.0 |
| abc-type branched-chain amino acid transport system, substrate-binding protein | SAMN05421747_11277 | Not Available | Positive | 3091074 - 3092339 | 46699.6 |
| 16s rrna (cytosine967-c5)-methyltransferase | SAMN05421747_11278 | Not Available | Positive | 3092355 - 3093530 | 43641.4 |
| thioredoxin 1 | SAMN05421747_11279 | Not Available | Negative | 3093761 - 3093991 | 8286.15 |
| putative membrane protein | SAMN05421747_11280 | Not Available | Positive | 3094047 - 3094343 | 11353.8 |
| Trna-leu | Not Available | Not Available | Positive | 3094455 - 3094538 | Not Available |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN05421747_11282 | Not Available | Negative | 3094631 - 3097819 | 116199.0 |
| membrane fusion protein, multidrug efflux system | SAMN05421747_11283 | Not Available | Negative | 3097860 - 3098990 | 39901.4 |
| outer membrane protein tolc | SAMN05421747_11284 | Not Available | Negative | 3099026 - 3100363 | 51018.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
