Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dephospho-coa kinase | SAMN05421747_11255 | Not Available | Positive | 3059504 - 3060097 | 21799.4 |
| putative mrna 3-end processing factor | SAMN05421747_11256 | Not Available | Positive | 3060102 - 3061064 | 36604.2 |
| putative binding domain-containing protein, n-terminal | SAMN05421747_11257 | Not Available | Negative | 3061191 - 3062459 | 46860.0 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN05421747_11258 | Not Available | Negative | 3062495 - 3064483 | 74469.0 |
| protein of unknown function | SAMN05421747_11259 | Not Available | Negative | 3064491 - 3065387 | 33779.2 |
| starch-binding associating with outer membrane | SAMN05421747_11260 | Not Available | Negative | 3065405 - 3067474 | 77821.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_11261 | Not Available | Negative | 3067496 - 3070654 | 117768.0 |
| nhl repeat-containing protein | SAMN05421747_11262 | Not Available | Negative | 3070674 - 3072008 | 49054.4 |
| glycerol uptake facilitator protein | SAMN05421747_11263 | Not Available | Negative | 3072274 - 3073008 | 25423.4 |
| glycerol kinase | SAMN05421747_11264 | Not Available | Negative | 3073054 - 3074538 | 53585.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
