Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05421747_11235 | Not Available | Positive | 3038506 - 3039180 | 25505.6 |
| signal transduction histidine kinase | SAMN05421747_11236 | Not Available | Positive | 3039181 - 3040455 | 49343.4 |
| hypothetical protein | SAMN05421747_11237 | Not Available | Negative | 3040448 - 3040699 | 9405.83 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_11238 | Not Available | Positive | 3041245 - 3044349 | 112693.0 |
| starch-binding associating with outer membrane | SAMN05421747_11239 | Not Available | Positive | 3044361 - 3045812 | 53867.2 |
| hypothetical protein | SAMN05421747_11240 | Not Available | Positive | 3045825 - 3046277 | 16334.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_11241 | Not Available | Positive | 3046676 - 3049891 | 116406.0 |
| starch-binding associating with outer membrane | SAMN05421747_11242 | Not Available | Positive | 3049904 - 3051376 | 53798.7 |
| large subunit ribosomal protein l9 | SAMN05421747_11243 | Not Available | Negative | 3051435 - 3051878 | 16268.8 |
| small subunit ribosomal protein s18 | SAMN05421747_11244 | Not Available | Negative | 3051891 - 3052154 | 10175.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
