Parapedobacter composti

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter composti is a Gram-negative, rod-shaped bacterium that has been characterized as non-spore-forming and demonstrates aerobic metabolic capabilities. Optimal growth conditions for this organism occur at a temperature of approximately 29.0°C, suggesting a preference for mesophilic environments. The Gram-negative nature of P. composti indicates the presence of a double membrane structure, which may play a crucial role in its interactions with the surrounding environment and influence its nutrient uptake mechanisms. The non-spore-forming trait of P. composti suggests a reliance on favorable environmental conditions for survival rather than the ability to withstand extreme stresses typically associated with sporulation. This characteristic may influence its ecological niches, as it may be less resilient to harsh conditions compared to spore-forming bacteria. Given its aerobic requirement, P. composti likely plays a role in biogeochemical processes where oxygen is available, potentially contributing to organic matter decomposition and nutrient cycling in its habitat. The specific temperature preference may position this microbe within certain ecological frameworks, such as composting systems or organic-rich environments where temperatures remain stable. The ability of P. composti to thrive in mesophilic and oxygen-rich conditions highlights its potential significance in microbial communities involved in organic matter degradation and nutrient recycling, emphasizing the interconnectedness of microbial life and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter composti
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter composti strain DSM 22900 genome assembly, contig:

Gene Summary

Adenine Count

1152102 bp

Thymine Count

1157457 bp

Guanine Count

1159480 bp

Cytosine Count

1152985 bp

Genome Length

4622024 bp

Protein-coding Genes

3993 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosomal protein s6--l-glutamate ligaseSAMN05421747_11225Not AvailableNegative3029297 - 303022333377.9
uncharacterized conserved proteinSAMN05421747_11226Not AvailableNegative3030220 - 303067217276.8
phosphoribosylformylglycinamidine cyclo-ligaseSAMN05421747_11227Not AvailableNegative3030687 - 303186542719.3
ompa-ompf porin, oop familySAMN05421747_11228Not AvailableNegative3031874 - 303238318666.9
predicted dehydrogenaseSAMN05421747_11229Not AvailablePositive3032533 - 303363640470.7
hypothetical proteinSAMN05421747_11230Not AvailableNegative3033642 - 303418420044.5
transcriptional regulator glxa family, contains an amidase domain and an arac-type dna-binding hth domainSAMN05421747_11231Not AvailableNegative3034181 - 303517637256.2
gtp-binding protein lepaSAMN05421747_11232Not AvailablePositive3035370 - 303716067134.5
methylenetetrahydrofolate dehydrogenase (nadp+) / methenyltetrahydrofolate cyclohydrolaseSAMN05421747_11233Not AvailablePositive3037181 - 303806231662.5
hypothetical proteinSAMN05421747_11234Not AvailablePositive3038078 - 303842512108.7

Displaying genes 2611 – 2620 of 4040 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.