Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s6--l-glutamate ligase | SAMN05421747_11225 | Not Available | Negative | 3029297 - 3030223 | 33377.9 |
| uncharacterized conserved protein | SAMN05421747_11226 | Not Available | Negative | 3030220 - 3030672 | 17276.8 |
| phosphoribosylformylglycinamidine cyclo-ligase | SAMN05421747_11227 | Not Available | Negative | 3030687 - 3031865 | 42719.3 |
| ompa-ompf porin, oop family | SAMN05421747_11228 | Not Available | Negative | 3031874 - 3032383 | 18666.9 |
| predicted dehydrogenase | SAMN05421747_11229 | Not Available | Positive | 3032533 - 3033636 | 40470.7 |
| hypothetical protein | SAMN05421747_11230 | Not Available | Negative | 3033642 - 3034184 | 20044.5 |
| transcriptional regulator glxa family, contains an amidase domain and an arac-type dna-binding hth domain | SAMN05421747_11231 | Not Available | Negative | 3034181 - 3035176 | 37256.2 |
| gtp-binding protein lepa | SAMN05421747_11232 | Not Available | Positive | 3035370 - 3037160 | 67134.5 |
| methylenetetrahydrofolate dehydrogenase (nadp+) / methenyltetrahydrofolate cyclohydrolase | SAMN05421747_11233 | Not Available | Positive | 3037181 - 3038062 | 31662.5 |
| hypothetical protein | SAMN05421747_11234 | Not Available | Positive | 3038078 - 3038425 | 12108.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
