Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fuconolactonase | SAMN05421747_11215 | Not Available | Positive | 3018622 - 3019452 | 31895.2 |
| l-fucose dehydrogenase | SAMN05421747_11216 | Not Available | Positive | 3019462 - 3020244 | 28045.7 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | SAMN05421747_11217 | Not Available | Negative | 3020249 - 3021202 | 35414.1 |
| hypothetical protein | SAMN05421747_11218 | Not Available | Positive | 3021337 - 3023487 | 79816.9 |
| ompa family protein | SAMN05421747_11219 | Not Available | Positive | 3023459 - 3024031 | 21757.1 |
| glutamate racemase | SAMN05421747_11220 | Not Available | Negative | 3024166 - 3024981 | 30157.6 |
| hypothetical protein | SAMN05421747_11221 | Not Available | Negative | 3025158 - 3026576 | 53688.8 |
| 3-dehydroquinate dehydratase | SAMN05421747_11222 | Not Available | Positive | 3026784 - 3027206 | 15131.1 |
| mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance protein | SAMN05421747_11223 | Not Available | Negative | 3027145 - 3028335 | 42117.6 |
| prolipoprotein diacylglyceryl transferase | SAMN05421747_11224 | Not Available | Negative | 3028427 - 3029260 | 31839.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
