Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_1125 | Not Available | Negative | 3004625 - 3008122 | 130776.0 |
| fecr protein | SAMN05421747_1126 | Not Available | Negative | 3008257 - 3009411 | 43606.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_1127 | Not Available | Positive | 3009581 - 3010261 | 26716.1 |
| alpha-1,2-mannosidase, putative | SAMN05421747_1128 | Not Available | Positive | 3010391 - 3012676 | 86350.5 |
| arac-type dna-binding protein | SAMN05421747_1129 | Not Available | Negative | 3012684 - 3013550 | 32835.2 |
| mfs transporter, fhs family, l-fucose permease | SAMN05421747_11210 | Not Available | Positive | 3013709 - 3014953 | 44713.8 |
| l-rhamnose mutarotase | SAMN05421747_11211 | Not Available | Positive | 3014961 - 3015317 | 14298.9 |
| altronate hydrolase | SAMN05421747_11212 | Not Available | Positive | 3015307 - 3016968 | 59716.6 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421747_11213 | Not Available | Positive | 3016987 - 3017760 | 27118.5 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05421747_11214 | Not Available | Positive | 3017778 - 3018635 | 30918.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
