Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN05421747_101248 | Not Available | Positive | 337733 - 339229 | 55378.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_101249 | Not Available | Positive | 339250 - 342453 | 118027.0 |
| hypothetical protein | SAMN05421747_101250 | Not Available | Positive | 342474 - 344237 | 67611.7 |
| gliding motility-associated c-terminal domain-containing protein | SAMN05421747_101251 | Not Available | Positive | 344300 - 349510 | 188289.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN05421747_101252 | Not Available | Positive | 349525 - 350439 | 33823.7 |
| alpha/beta hydrolase family protein | SAMN05421747_101253 | Not Available | Positive | 350459 - 351202 | 27215.8 |
| hypothetical protein | SAMN05421747_101254 | Not Available | Positive | 351460 - 351696 | 8989.8 |
| protein of unknown function | SAMN05421747_101255 | Not Available | Positive | 351704 - 354682 | 111603.0 |
| rhamnogalacturonan endolyase | SAMN05421747_101256 | Not Available | Positive | 354669 - 356492 | 66727.2 |
| rhamnogalacturonyl hydrolase yesr | SAMN05421747_101257 | Not Available | Positive | 356515 - 357675 | 44620.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
