Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein ompa | SAMN05421747_111137 | Not Available | Positive | 2993137 - 2993820 | 23538.2 |
| secondary thiamine-phosphate synthase enzyme | SAMN05421747_111138 | Not Available | Negative | 2993876 - 2994298 | 15935.9 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05421747_111139 | Not Available | Positive | 2994351 - 2995478 | 42079.8 |
| dtdp-glucose 4,6-dehydratase | SAMN05421747_111140 | Not Available | Positive | 2995499 - 2996515 | 38782.6 |
| udp-glucose 4-epimerase | SAMN05421747_111141 | Not Available | Positive | 2996516 - 2997547 | 37535.5 |
| dtdp-glucose 4,6-dehydratase | SAMN05421747_111142 | Not Available | Positive | 2997552 - 2997647 | 3539.43 |
| protein of unknown function | SAMN05421747_1121 | Not Available | Negative | 2997725 - 3000199 | 93483.2 |
| f5/8 type c domain-containing protein | SAMN05421747_1122 | Not Available | Negative | 3000217 - 3001365 | 43407.5 |
| protein of unknown function | SAMN05421747_1123 | Not Available | Negative | 3001406 - 3002611 | 45493.2 |
| starch-binding associating with outer membrane | SAMN05421747_1124 | Not Available | Negative | 3002654 - 3004591 | 73891.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
