Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN05421747_101238 | Not Available | Positive | 314784 - 316751 | 74811.9 |
| rhamnogalacturonan endolyase | SAMN05421747_101239 | Not Available | Negative | 316895 - 317593 | 26374.8 |
| hypothetical protein | SAMN05421747_101240 | Not Available | Positive | 317615 - 320341 | 101132.0 |
| rhamnogalacturonyl hydrolase yesr | SAMN05421747_101241 | Not Available | Positive | 320387 - 321769 | 50942.4 |
| beta galactosidase small chain | SAMN05421747_101242 | Not Available | Positive | 321773 - 324688 | 109094.0 |
| signal transduction histidine kinase | SAMN05421747_101243 | Not Available | Negative | 324685 - 328413 | 142856.0 |
| fasciclin domain-containing protein | SAMN05421747_101244 | Not Available | Positive | 328994 - 331198 | 82502.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_101245 | Not Available | Positive | 331211 - 334474 | 122353.0 |
| starch-binding associating with outer membrane | SAMN05421747_101246 | Not Available | Positive | 334486 - 335985 | 57627.4 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN05421747_101247 | Not Available | Positive | 336015 - 337706 | 62681.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
