Parapedobacter composti

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter composti is a Gram-negative, rod-shaped bacterium that has been characterized as non-spore-forming and demonstrates aerobic metabolic capabilities. Optimal growth conditions for this organism occur at a temperature of approximately 29.0°C, suggesting a preference for mesophilic environments. The Gram-negative nature of P. composti indicates the presence of a double membrane structure, which may play a crucial role in its interactions with the surrounding environment and influence its nutrient uptake mechanisms. The non-spore-forming trait of P. composti suggests a reliance on favorable environmental conditions for survival rather than the ability to withstand extreme stresses typically associated with sporulation. This characteristic may influence its ecological niches, as it may be less resilient to harsh conditions compared to spore-forming bacteria. Given its aerobic requirement, P. composti likely plays a role in biogeochemical processes where oxygen is available, potentially contributing to organic matter decomposition and nutrient cycling in its habitat. The specific temperature preference may position this microbe within certain ecological frameworks, such as composting systems or organic-rich environments where temperatures remain stable. The ability of P. composti to thrive in mesophilic and oxygen-rich conditions highlights its potential significance in microbial communities involved in organic matter degradation and nutrient recycling, emphasizing the interconnectedness of microbial life and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter composti
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter composti strain DSM 22900 genome assembly, contig:

Gene Summary

Adenine Count

1152102 bp

Thymine Count

1157457 bp

Guanine Count

1159480 bp

Cytosine Count

1152985 bp

Genome Length

4622024 bp

Protein-coding Genes

3993 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heparinase ii/iii-like proteinSAMN05421747_11136Not AvailablePositive2895836 - 289778273884.2
glycosyl hydrolase family 88SAMN05421747_11137Not AvailablePositive2897817 - 289902245102.9
hexosaminidaseSAMN05421747_11138Not AvailablePositive2899039 - 290069763413.6
glucosamine-6-phosphate deaminaseSAMN05421747_11139Not AvailablePositive2900835 - 290276673087.0
tonb-dependent receptor plug domainSAMN05421747_11140Not AvailablePositive2903204 - 290386323224.8
tonb dependent receptorSAMN05421747_11141Not AvailablePositive2903817 - 290503747527.4
starch-binding associating with outer membraneSAMN05421747_11142Not AvailablePositive2905070 - 290690269490.8
fucose permeaseSAMN05421747_11143Not AvailableNegative2906990 - 290820142864.5
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05421747_11144Not AvailablePositive2908391 - 290916426576.8
putative membrane proteinSAMN05421747_11145Not AvailableNegative2909185 - 290954412912.4

Displaying genes 2481 – 2490 of 4040 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.