Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein hu-beta | SAMN05421747_11085 | Not Available | Negative | 2790785 - 2791069 | 10372.7 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421747_11086 | Not Available | Positive | 2791320 - 2792141 | 28569.2 |
| mannonate dehydratase | SAMN05421747_11087 | Not Available | Positive | 2792162 - 2793325 | 44133.5 |
| glucuronate isomerase | SAMN05421747_11088 | Not Available | Positive | 2793329 - 2794759 | 54653.5 |
| Trna-arg | Not Available | Not Available | Positive | 2794874 - 2794948 | Not Available |
| peroxiredoxin (alkyl hydroperoxide reductase subunit c) | SAMN05421747_11090 | Not Available | Positive | 2795117 - 2795761 | 24088.3 |
| thiol-disulfide isomerase or thioredoxin | SAMN05421747_11091 | Not Available | Positive | 2795839 - 2796153 | 11730.1 |
| hypothetical protein | SAMN05421747_11092 | Not Available | Positive | 2796134 - 2796394 | 9618.7 |
| n-acetylglucosaminyl deacetylase, lmbe family | SAMN05421747_11093 | Not Available | Positive | 2796695 - 2799133 | 90197.2 |
| hypothetical protein | SAMN05421747_11094 | Not Available | Positive | 2799150 - 2799350 | 7334.86 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
