Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-rhamnosidase | SAMN05421747_101228 | Not Available | Positive | 297161 - 299785 | 98660.1 |
| l-arabinose isomerase | SAMN05421747_101229 | Not Available | Negative | 299860 - 300087 | 8029.92 |
| lysophospholipase l1 | SAMN05421747_101230 | Not Available | Positive | 300398 - 301489 | 40239.2 |
| co-chaperonin groes (hsp10) | SAMN05421747_101231 | Not Available | Negative | 301500 - 301880 | 14256.2 |
| alpha-l-rhamnosidase | SAMN05421747_101232 | Not Available | Positive | 302194 - 304989 | 105441.0 |
| alpha-l-rhamnosidase | SAMN05421747_101233 | Not Available | Positive | 305070 - 307325 | 84531.6 |
| alpha-l-rhamnosidase | SAMN05421747_101234 | Not Available | Positive | 307432 - 309153 | 64074.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_101235 | Not Available | Positive | 309302 - 309910 | 24016.0 |
| fecr protein | SAMN05421747_101236 | Not Available | Positive | 310011 - 311204 | 45039.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_101237 | Not Available | Positive | 311344 - 314751 | 125982.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
