Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid aminotransferase | SAMN05421747_101218 | Not Available | Negative | 284626 - 285516 | 33140.4 |
| f-type h+-transporting atpase subunit epsilon | SAMN05421747_101219 | Not Available | Negative | 285908 - 286156 | 8711.5 |
| f-type h+-transporting atpase subunit beta | SAMN05421747_101220 | Not Available | Negative | 286170 - 287672 | 54473.5 |
| hypothetical protein | SAMN05421747_101221 | Not Available | Negative | 287798 - 288409 | 23206.0 |
| l-rhamnose-h+ transport protein | SAMN05421747_101222 | Not Available | Positive | 288593 - 289669 | 38981.1 |
| rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | SAMN05421747_101223 | Not Available | Positive | 289714 - 291840 | 77071.1 |
| l-rhamnose isomerase / sugar isomerase | SAMN05421747_101224 | Not Available | Positive | 291930 - 293204 | 47192.2 |
| sugar (pentulose or hexulose) kinase | SAMN05421747_101225 | Not Available | Positive | 293204 - 294595 | 52307.2 |
| l-lactate dehydrogenase (cytochrome) | SAMN05421747_101226 | Not Available | Positive | 294585 - 295751 | 43238.8 |
| predicted dehydrogenase | SAMN05421747_101227 | Not Available | Positive | 295870 - 297090 | 44952.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
