Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421747_101198 | Not Available | Positive | 259591 - 260310 | 28000.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_101199 | Not Available | Positive | 260655 - 263726 | 112982.0 |
| starch-binding associating with outer membrane | SAMN05421747_101200 | Not Available | Positive | 263739 - 265367 | 61780.1 |
| predicted dehydrogenase | SAMN05421747_101201 | Not Available | Positive | 265502 - 266947 | 53315.6 |
| hypothetical protein | SAMN05421747_101202 | Not Available | Positive | 266998 - 267132 | 5017.45 |
| ribonucleoside-diphosphate reductase beta chain | SAMN05421747_101203 | Not Available | Negative | 267125 - 268108 | 37597.1 |
| ribonucleoside-diphosphate reductase alpha chain | SAMN05421747_101204 | Not Available | Negative | 268148 - 270253 | 80591.6 |
| protein involved in ribonucleotide reduction | SAMN05421747_101205 | Not Available | Negative | 270210 - 270623 | 15616.4 |
| thioredoxin 1 | SAMN05421747_101206 | Not Available | Negative | 270741 - 270977 | 9033.04 |
| l-threonine ammonia-lyase | SAMN05421747_101207 | Not Available | Negative | 271302 - 272534 | 45295.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
