Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Parapedobacter composti
Accession NumberFOLL00000000.1
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN05421747_1018 | Not Available | - | 5812 - 8646 | 105537.0 |
| regulatory protein, tetr family | SAMN05421747_1019 | Not Available | + | 8836 - 9375 | 21183.1 |
| beta-glucosidase | SAMN05421747_10110 | Not Available | + | 9499 - 11208 | 63344.7 |
| uncharacterized lipoprotein yddw, upf0748 family | SAMN05421747_10111 | Not Available | - | 11216 - 12829 | 62447.9 |
| l-serine dehydratase | SAMN05421747_10112 | Not Available | + | 13014 - 14441 | 51240.5 |
| phosphoribosyl 1,2-cyclic phosphodiesterase | SAMN05421747_10113 | Not Available | + | 14462 - 15145 | 25709.1 |
| peptidase family s41 | SAMN05421747_10114 | Not Available | + | 15332 - 16777 | 52259.3 |
| lipoyl(octanoyl) transferase | SAMN05421747_10115 | Not Available | - | 16774 - 17487 | 26777.7 |
| gtp-binding protein hflx | SAMN05421747_10116 | Not Available | - | 17514 - 18719 | 45683.9 |
| uncharacterized membrane protein | SAMN05421747_10117 | Not Available | - | 18958 - 19443 | 17873.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.